Index

C

cellinfo (cmapBQ.config.TableDirectory attribute) cmap_cell() (in module cmapBQ.query) cmap_compounds() (in module cmapBQ.query) cmap_genes() (in module cmapBQ.query) cmap_genetic_perts() (in module cmapBQ.query) cmap_matrix() (in module cmapBQ.query) cmap_profiles() (in module cmapBQ.query) cmap_sig() (in module cmapBQ.query) cmapBQ.config module cmapBQ.query module

cmapBQ.tools module cmapBQ.tools.cmap_compounds module cmapBQ.tools.cmap_matrix module cmapBQ.utils module, [1] compoundinfo (cmapBQ.config.TableDirectory attribute) Configuration (class in cmapBQ.config) credentials (cmapBQ.config.Configuration attribute) csv_to_gctx() (in module cmapBQ.utils), [1]

G

geneinfo (cmapBQ.config.TableDirectory attribute) genetic_pertinfo (cmapBQ.config.TableDirectory attribute) get_bq_client() (in module cmapBQ.config) (in module cmapBQ.query)

get_default_config() (in module cmapBQ.config) get_table_info() (in module cmapBQ.query)

I

instinfo (cmapBQ.config.TableDirectory attribute)

L

level3 (cmapBQ.config.TableDirectory attribute) level4 (cmapBQ.config.TableDirectory attribute) level5 (cmapBQ.config.TableDirectory attribute) list_cmap_compounds() (in module cmapBQ.query)

list_cmap_moas() (in module cmapBQ.query) list_cmap_targets() (in module cmapBQ.query) list_tables() (in module cmapBQ.query) long_to_gctx() (in module cmapBQ.utils), [1]

M

main() (in module cmapBQ.tools.cmap_compounds) (in module cmapBQ.tools.cmap_matrix) mk_out_dir() (in module cmapBQ.utils) module cmapBQ.config cmapBQ.query cmapBQ.tools cmapBQ.tools.cmap_compounds cmapBQ.tools.cmap_matrix cmapBQ.utils, [1]

P

parse_args() (in module cmapBQ.tools.cmap_compounds) (in module cmapBQ.tools.cmap_matrix)

parse_condition() (in module cmapBQ.utils)

R

run_query() (in module cmapBQ.query)

S

set_default_config() (in module cmapBQ.config) setup_credentials() (in module cmapBQ.config)

siginfo (cmapBQ.config.TableDirectory attribute) str2bool() (in module cmapBQ.utils)

T

TableDirectory (class in cmapBQ.config)

tables (cmapBQ.config.Configuration attribute)

W

write_args() (in module cmapBQ.utils)

write_status() (in module cmapBQ.utils)